Wikipedia:Wiki Ed/University of Michigan/CHEM 455 505 Special Topics in Biochemistry - Nucleic Acids Biochemistry (Fall 2020)

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Course name
CHEM 455_505 Special Topics in Biochemistry - Nucleic Acids Biochemistry
Institution
University of Michigan
Instructor
Yulia Sevryugina
Wikipedia Expert
Ian (Wiki Ed)
Subject
Biological Chemistry
Course dates
2020-08-31 00:00:00 UTC – 2020-12-08 23:59:59 UTC
Approximate number of student editors
38


We now realize that the human genome contains at least 80,000 non-redundant non-coding RNA genes, outnumbering protein-coding genes by at least 4-fold, a revolutionary insight that has led some researchers to dub the eukaryotic cell an “RNA machine”. How exactly these ncRNAs guide every cellular function – from the maintenance and processing to the regulated expression of all genetic information – lies at the leading edge of the modern biosciences, from stem cell to cancer research. This course will provide an equally broad as deep overview of the structure, function and biology of DNA and particularly RNA. We will explore important examples from the current literature and the course content will evolve accordingly.

The class will be taught from a chemical/molecular perspective and will bring modern interdisciplinary concepts from biochemistry, biophysics and molecular biology to the fore.

Student Assigned Reviewing
AnnaGraceAnders Anticancer gene Anticancer gene, Tumor suppressor
Brmunsay Anticancer gene User:Akohrman22/Tumor Suppresor sandbox
Bluechemist22 Anticancer gene
JUHAAS14 CccDNA Molecular lesion
Moniolsz Molecular lesion
Isabelle1059 RNA Therapeutics
Annatrzcinski Molecular lesion CccDNA
Dimccall Anticancer gene Tumor suppressor
Yalmanso RNA polymerase IV
Mbman0869 CccDNA Molecular lesion
AyaFattah CccDNA
GoblueF2020 Molecular lesion CccDNA
Kwakdaa RNA Therapeutics Locked nucleic acid
NWJchem455 RNA polymerase IV
Jennaconnolly Locked nucleic acid
Antknee1 Adenovirus early region 1A RNA Therapeutics
Biophysical Endosymbiont RNA Therapeutics
Ttrip Molecular lesion
Madknapp CccDNA
ColorMeAfrican Locked nucleic acid Adenovirus early region 1A
Garhingh Adenovirus early region 1A
PhilippHuettemann
Katkarpoff7 Molecular lesion CccDNA
Spensley15 Intrinsic termination
Hoorayforrna Adenovirus early region 1A
Mavs123 RNA polymerase IV
Tvhoang2021 Tumor suppressor
Timothy.li2021 Intrinsic termination
Sonofsu Tumor suppressor
Cathydaniel06 CccDNA
Akohrman22 Tumor suppressor
Basketballwatersportblue Adenovirus early region 1A Locked nucleic acid
Schamdin RNA polymerase IV
Ali.Trachtenberg RNA Therapeutics
LeMelleKH2 Intrinsic termination RNA polymerase IV
SultanElhaj RNA polymerase IV
Miraprabhu Locked nucleic acid
YihuaL Adenovirus early region 1A RNA Therapeutics
Phylix690 Locked nucleic acid Adenovirus early region 1A
Nsgirgla Tumor suppressor
Klamba Intrinsic termination
Goblue123

Timeline

Week 1

Course meetings
Tuesday, 1 September 2020   |   Thursday, 3 September 2020
In class - Introduction to the Wikipedia assignment

Welcome to your Wikipedia assignment's course timeline. This page guides you through the steps you'll need to complete for your Wikipedia assignment, with links to training modules and your classmates' work spaces.

Your course has been assigned a Wikipedia Expert. You can reach them through the Get Help button at the top of this page.

Resources:

In class - Discussion

Thinking about Wikipedia

Milestones

This week, everyone should have a Wikipedia account.

Week 2

Course meetings
Tuesday, 8 September 2020   |   Thursday, 10 September 2020
Assignment - Get started on Wikipedia
  • Create an account and join this course page, using the enrollment link your instructor sent you. (Because of Wikipedia's technical restraints, you may receive a message that you cannot create an account. To resolve this, please try again off campus or the next day.)
  • Create a User page.
  • To practice editing and communicating on Wikipedia, introduce yourself on the user talk page of one of your classmates, who should also be enrolled in the table at the bottom of the page.
Milestones

This week, everyone should have a Wikipedia account and be listed on the course page.

Week 3

Course meetings
Tuesday, 15 September 2020   |   Thursday, 17 September 2020
Assignment - Topic Selection

Please work in groups of four to five (4-5) and choose three (3) potential topics to edit; for each potential topic write one paragraph to explain the changes you plan to make to an existing entry and why, or why this new topic should be included in Wikipedia. Your topic and explanation should be sent to Nils in a Word document by class time on Tue Sep 22. Selected topics for each group will be assigned within a few days.

Assignment - Choose possible topics

Exercise

[[../../../training/students/choose-topic-exercise|Choose a topic]]

Resource: Editing Wikipedia, page 6 and Choosing an article

Assignment - Evaluate Wikipedia

Exercise

Evaluate an article

Week 4

Course meetings
Tuesday, 22 September 2020   |   Thursday, 24 September 2020
Assignment - Topics selection DUE
Each group shall sent Nils three (3) potential topics to edit on Wikipedia in a Word document by class time on Tue Sep 22 . Please, remember to write one paragraph for each topic to explain the changes you plan to make to an existing entry and why, or why this new topic should be included in Wikipedia. These topics will be reviewed within a few days and each group will be assigned a selected topic.
Assignment - Start drafting your contributions

Resource: Editing Wikipedia, pages 7–9

Milestones

This week, everyone shall have the topic to write about and start drafting.

Once assignement is made, go to the Google sheet from Yulia's presentation and:

Week 5

Course meetings
Tuesday, 29 September 2020   |   Thursday, 1 October 2020
Assignment - First Draft

This week you are working on your first draft that will need to be submitted by Tue Oct 6.

Guide(s) for writing articles in your topic area

Chemistry

Genes and Proteins

Milestones

Everyone is working on their first article draft. First draft is DUE on Tue, Oct 6.

Week 6

Course meetings
Tuesday, 6 October 2020   |   Thursday, 8 October 2020
Assignment - First draft DUE

Each group will post their draft in the Sandbox on Wikipedia under their account and post a link to their Sandbox to the Google sheet from Yulia's presentation and also to the Article table on the Wikipedia Course Page. The explanation of changes you plan to make should also be posted to the Talk page of the Sandbox. This draft needs to be completed by class time on Tue Oct 6.

Assignment - Peer review and copyedit

Everyone is asked to peer review at least one topic

  • On the table at the bottom of this course page, add your username next to the article you are assigned to peer review.
  • Also enter the link to the article your group peer reviewing to theGoogle sheet from Yulia's presentation
  • Follow the instructions in the Add your peer review critiques
  • Peer review the article assigned to you. Leave suggestions on the Sandbox talk pages according to the Peer Review Criteria listed in the assignment.
  • Copy-edit the reviewed articles. 
Assignment - Peer review two articles

Guiding framework

Milestones

Everyone has started peer reviewing for other classmates. Peer-review is DUE on Thu Oct 15.

Week 7

Course meetings
Tuesday, 13 October 2020   |   Thursday, 15 October 2020
Assignment - Peer review DUE

 Everyone needs to complete peer-review by class time on Thu, Oct 15.

  • Leave suggestions on the Sandbox talk pages according to the Peer Review Criteria listed in the assignment.
  • Copy-edit the reviewed articles.
Assignment - Respond to your peer review

You probably have some feedback from other students and possibly other Wikipedians. Consider their suggestions, decide whether it makes your work more accurate and complete, and edit your draft to make those changes. If you disagree with a suggestion, use talk pages to politely discuss and come to a consensus on your edit.

Resources:

  • Editing Wikipedia, pages 12 and 14
  • Reach out to your Wikipedia Expert if you have any questions.
In class - Start editing
  • Begin working with classmates and other editors to polish your short starter article and fix any major issues.
  • Continue research in preparation for expanding your article and adding images.
In class - Using images
  • Demo uploading images and adding images to articles.
  • Share experiences and discuss problems.

Resources: Illustrating Wikipedia  

In class - Discussion

What's a content gap?

Milestones

Every student has finished reviewing their assigned articles, making sure that every article has been reviewed.

Week 8

Course meetings
Tuesday, 20 October 2020   |   Thursday, 22 October 2020
Assignment - Prepare for in-class presentation

Prepare for in-class presentation about your Wikipedia editing experience.

In class - In-class presentation Oct 22

On Thu, Oct 22, several assigned groups will each do a 5-min in-class presentation (worth 5 points) of their sandbox draft and their editing experiences. The presenters also need to address peer-review comments in their presentation.

Week 9

Course meetings
Tuesday, 27 October 2020   |   Thursday, 29 October 2020
In class - In-class presentation Oct 27

On Tue, Oct 27, remaining groups will each do a 5-min in-class presentation (worth 5 points) of their sandbox draft and their editing experiences. The presenters also need to address peer-review comments in their presentation

In class - Continue improving your article

Exercise

Add links to your article

Now's the time to revisit your text and refine your work. You may do more research and find missing information; rewrite the lead section to represent all major points; reorganize the text to communicate the information better; or add images and other media.

Resources: Citing sources and Avoiding plagiarism

Milestones

Every group has presented their work on selected article and obtained feedback that could be used to improve articles further. 

Week 10

Course meetings
Tuesday, 3 November 2020   |   Thursday, 5 November 2020
Assignment - Polish your work

Continue to expand and improve your work, and format your article to match Wikipedia's tone and standards. Remember to contact your Wikipedia Expert at any time if you need further help!

Assignment - Final article

It's the final week to develop your article.

  • Read Editing Wikipedia page 15 to review a final check-list before completing your assignment.
  • Don't forget that you can ask for help from your Wikipedia Expert at any time!
Milestones

Everyone has completed a paper and makes final touches on images and citations

Week 11

Course meetings
Tuesday, 10 November 2020   |   Thursday, 12 November 2020
Assignment - Move your work to Wikipedia "mainspace"

Now that you've improved your draft based on others' feedback, it's time to move your work live - to the "mainspace."

  • Move your sandbox articles into "mainspace".
    • If you are expanding an existing article, copy your edit into the article. If you are making many small edits, save after each edit before you make the next one. Do NOT paste over the entire existing article, or large sections of the existing article.
    • If you are creating a new article, do NOT copy and paste your text, or there will be no record of your work history. Follow the instructions in the "Moving out of your sandbox" handout.
  • A general reminder: Don't panic if your contribution disappears, and don't try to force it back in.
    • Check to see if there is an explanation of the edit on the article's talk page. If not, (politely) ask why it was removed.
    • Contact your instructor or Wikipedia Content Expert and let them know.
  • A permanent link to the page before you post your edits is normally available from the sidebar, under Toolbox -> Permanent link. Once clicked, the URL of the page change to a link with unique numbers like http://en.wikipedia.org/w/index.php?title=Suzuki_reaction&oldid=577432702 . Take this permanent link of the page and post it to this Google Document under the column “Link to the history page before your edits”.
  • Post a permanent link w/final post to this Google Document

Handout: Moving out of your sandbox

Resource: Editing Wikipedia, page 13

Milestones

Every group has moved their work/articles to the Wikipadia "mainspace"

Week 12

Course meetings
Tuesday, 17 November 2020   |   Thursday, 19 November 2020
Milestones

Everyone should have finished all of the work they'll do on Wikipedia, and be ready for grading.