In molecular biology, Yce-I protein domain is a putative periplasmic protein. This entry represents the lipid-binding protein YceI from Escherichia coli [1] and the polyisoprenoid-binding protein TTHA0802 from Thermus thermophilus.[2] Its role is to help aid the biosynthesis of isoprenoid, an important molecule found in all living organisms.

YceI
Crystal structure of the polyisoprenoid-binding protein, TT1927B, from Thermus thermophilus hb8
Identifiers
SymbolYceI
PfamPF04264
InterProIPR007372
SCOP21uf6 / SCOPe / SUPFAM
OPM superfamily101
OPM protein3hpe
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary

Structure

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Both of these proteins share a common domain with an 8-stranded beta-barrel fold. This resembles the lipocalin fold, although no sequence homology exists with lipocalins. In TTHA0802, the protein binds the polyisoprenoid chain within the pore of the barrel via hydrophobic interactions.[2] Sequence homologues of this core structure are present in a wide range of bacteria and archaea.

Function

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The crystal structures suggests that this family of proteins plays an important role in isoprenoid quinone metabolism or in transport or storage. In both cases, the protein is a homodimer, each monomer being characterized by a lipocalin fold.[2]

References

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  1. ^ Stancik LM, Stancik DM, Schmidt B, Barnhart DM, Yoncheva YN, Slonczewski JL (August 2002). "pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli". J. Bacteriol. 184 (15): 4246–58. doi:10.1128/jb.184.15.4246-4258.2002. PMC 135203. PMID 12107143.
  2. ^ a b c Handa N, Terada T, Doi-Katayama Y, Hirota H, Tame JR, Park SY, Kuramitsu S, Shirouzu M, Yokoyama S (April 2005). "Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8". Protein Sci. 14 (4): 1004–10. doi:10.1110/ps.041183305. PMC 2253440. PMID 15741337.
This article incorporates text from the public domain Pfam and InterPro: IPR007372