Wikipedia:Wiki Ed/University of Michigan/CHEM 455 505 Special Topics in Biochemistry - Nucleic Acids Biochemistry (Fall 2019)

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Course name
CHEM 455_505 Special Topics in Biochemistry - Nucleic Acids Biochemistry
Institution
University of Michigan
Instructor
Yulia Sevryugina
Wikipedia Expert
Ian (Wiki Ed)
Subject
Biological Chemistry
Course dates
2019-09-04 00:00:00 UTC – 2019-12-10 23:59:59 UTC
Approximate number of student editors
28


We now realize that the human genome contains at least 80,000 non-redundant non-coding RNA genes, outnumbering protein-coding genes by at least 4-fold, a revolutionary insight that has led some researchers to dub the eukaryotic cell an “RNA machine”. How exactly these ncRNAs guide every cellular function – from the maintenance and processing to the regulated expression of all genetic information – lies at the leading edge of the modern biosciences, from stem cell to cancer research. This course will provide an equally broad as deep overview of the structure, function and biology of DNA and particularly RNA. We will explore important examples from the current literature and the course content will evolve accordingly.

The class will be taught from a chemical/molecular perspective and will bring modern interdisciplinary concepts from biochemistry, biophysics and molecular biology to the fore.

Student Assigned Reviewing
Majhisrijoni Pseudouridine DNA transposon
Lpmiller19 Kozak consensus sequence Ribosomal RNA
Cat Wilhelm
Sawagsta Non-canonical base pairing Pseudouridine
Glwright1 Nucleic acid quaternary structure Kozak consensus sequence
HReynolds2324 Ribosomal RNA
JeffLu98 Ribosomal RNA Non-canonical base pairing
Nmcmyn DNA transposon Exome
Emilystring Non-canonical base pairing Pseudouridine
Miranda19983$! Ribose
Benancionikolas Nucleic acid quaternary structure Kozak consensus sequence
Srudinru Pseudouridine DNA transposon
*-Natalie-Janai-*
Ppoojawiki Coding region, Exome Ribose
Camarn6 Kozak consensus sequence
Pragpats Exome, Coding region Ribose
Esirls Ribosomal RNA Non-canonical base pairing
NealCaptain DNA transposon
Ihall14 Pseudouridine DNA transposon
Mhawada Ribose
RNAmonroe Kozak consensus sequence Ribosomal RNA
Cindycchu Exome, Coding region Ribose
Arivero01 Non-canonical base pairing Pseudouridine
Saltymedic Ribose
Natalieda Nucleic acid quaternary structure
Abose163 DNA transposon Exome

Timeline

Week 1

Course meetings
Thursday, 5 September 2019
In class - Introduction to the Wikipedia assignment

Welcome to your Wikipedia assignment's course timeline. This page guides you through the steps you'll need to complete for your Wikipedia assignment, with links to training modules and your classmates' work spaces.

Your course has been assigned a Wikipedia Expert. You can reach them through the Get Help button at the top of this page.

Resources:

Assignment - Get started on Wikipedia
  • Create an account and join this course page, using the enrollment link your instructor sent you. (Because of Wikipedia's technical restraints, you may receive a message that you cannot create an account. To resolve this, please try again off campus or the next day.)
  • Create a User page.
  • To practice editing and communicating on Wikipedia, introduce yourself on the user talk page of one of your classmates, who should also be enrolled in the table at the bottom of the page.
Milestones

This week, everyone should have a Wikipedia account.

Week 2

Course meetings
Tuesday, 10 September 2019   |   Thursday, 12 September 2019
Assignment - Evaluate Wikipedia

Exercise

Evaluate an article

Milestones

This week, everyone should have a Wikipedia account and be listed on the course page.

Week 3

Course meetings
Tuesday, 17 September 2019   |   Thursday, 19 September 2019
In class -

Please work in groups of four to five (4-5) and choose three (3) potential topics to edit; for each potential topic write one paragraph to explain the changes you plan to make to an existing entry and why, or why this new topic should be included in Wikipedia. Your topic and explanation should be sent to Nils in a Word document by class time on Tue Sep 24. Selected topics for each group will be assigned within a few days.

Assignment - Choose possible topics

Exercise

[[../../../training/students/choose-topic-exercise|Choose a topic]]

Resource: Editing Wikipedia, page 6 and Choosing an article

In class - Discussion

What's a content gap?

Week 4

Course meetings
Tuesday, 24 September 2019   |   Thursday, 26 September 2019
Assignment - Topics selection DUE

Please work in groups of two to three (2-3) and choose three (3) potential topics to edit; for each potential topic write one paragraph to explain the changes you plan to make to an existing entry and why, or why this new topic should be included in Wikipedia. Your topic and explanation should be sent to Nils in a Word document by class time on Tue Sep 24. Selected topics for each group will be assigned within a few days.

Milestones

This week, everyone shall have the topic to write about

Week 5

Course meetings
Tuesday, 1 October 2019   |   Thursday, 3 October 2019
Assignment - Start drafting your contributions

Resource: Editing Wikipedia, pages 7–9

Guide(s) for writing articles in your topic area

Chemistry

Genes and Proteins

Milestones

Everyone has begun writing their article drafts.

Week 6

Course meetings
Tuesday, 8 October 2019   |   Thursday, 10 October 2019
Assignment - First draft DUE

Each group will post their draft in the Sandbox on Wikipedia under their account and post a link to their Sandbox in the Article table on the Wikipedia Course Page. The explanation of changes you plan to make should also be posted to the Talk page of the Sandbox. This draft needs to be completed by class time on Thu Oct 10.

In class - Start editing
  • Begin working with classmates and other editors to polish your short starter article and fix any major issues.
  • Continue research in preparation for expanding your article and adding images.
In class - Using images
  • Demo uploading images and adding images to articles.
  • Share experiences and discuss problems.

Resources: Illustrating Wikipedia  

Milestones

Everyone has completed writing their first article drafts and started editing them.

Week 7

Course meetings
Thursday, 17 October 2019
In class - Peer review and copyedit
  • On the table at the bottom of this course page, add your username next to the article you are assigned to peer review.
  • Peer review the article assigned to you. Leave suggestions on the Sandbox talk pages according to the Peer Review Criteria listed in the assignment.
  • Copy-edit the reviewed articles.
Assignment - Peer review two articles

Guiding framework

In class - Discussion

Thinking about Wikipedia

Milestones

Everyone has started peer reviewing for other classmates

Week 8

Course meetings
Tuesday, 22 October 2019   |   Thursday, 24 October 2019
Assignment - Peer review DUE
  •  Leave suggestions on the Sandbox talk pages according to the Peer Review Criteria listed in the assignment.
  • Copy-edit the reviewed articles.
Assignment - Respond to your peer review

You probably have some feedback from other students and possibly other Wikipedians. Consider their suggestions, decide whether it makes your work more accurate and complete, and edit your draft to make those changes. If you disagree with a suggestion, use talk pages to politely discuss and come to a consensus on your edit.

Resources:

  • Editing Wikipedia, pages 12 and 14
  • Reach out to your Wikipedia Expert if you have any questions.
Assignment - Prepare for in-class presentation

Prepare for an in-class presentation about your Wikipedia editing experience.

Milestones

Every student has finished reviewing their assigned articles, making sure that every article has been reviewed.

Week 9

Course meetings
Tuesday, 29 October 2019   |   Thursday, 31 October 2019
In class - In-class presentation

Each group is required to do a 5-min in-class presentation (worth 5 points) of their sandbox draft and their editing experiences in-class on Tue Oct 29 and Thu Oct 31.

In class - Continue improving your article

Exercise

Add links to your article

Now's the time to revisit your text and refine your work. You may do more research and find missing information; rewrite the lead section to represent all major points; reorganize the text to communicate the information better; or add images and other media.

Resources: Citing sources and Avoiding plagiarism

Week 10

Course meetings
Tuesday, 5 November 2019   |   Thursday, 7 November 2019
Assignment - Polish your work

Continue to expand and improve your work, and format your article to match Wikipedia's tone and standards. Remember to contact your Wikipedia Expert at any time if you need further help!

Milestones

Everyone has completed a paper and makes final touches on images and citations

Week 11

Course meetings
Tuesday, 12 November 2019   |   Thursday, 14 November 2019
Assignment - Begin moving your work to Wikipedia

Now that you've improved your draft based on others' feedback, it's time to move your work live - to the "mainspace."

  • Move your sandbox articles into "mainspace".
    • If you are expanding an existing article, copy your edit into the article. If you are making many small edits, save after each edit before you make the next one. Do NOT paste over the entire existing article, or large sections of the existing article.
    • If you are creating a new article, do NOT copy and paste your text, or there will be no record of your work history. Follow the instructions in the "Moving out of your sandbox" handout.
  • A general reminder: Don't panic if your contribution disappears, and don't try to force it back in.
    • Check to see if there is an explanation of the edit on the article's talk page. If not, (politely) ask why it was removed.
    • Contact your instructor or Wikipedia Content Expert and let them know.
  • Begin expanding your article into a comprehensive treatment of the topic.

Handout: Moving out of your sandbox

Resource: Editing Wikipedia, page 13

Week 12

Course meetings
Tuesday, 19 November 2019   |   Thursday, 21 November 2019
Assignment - Final article

It's the final week to develop your article.

  • Read Editing Wikipedia page 15 to review a final check-list before completing your assignment.
  • Don't forget that you can ask for help from your Wikipedia Expert at any time!
Assignment - Move article to Wikipedia

Add final touches to your article and move it to the Wikipedia page

Milestones

Everyone should have finished all of the work they'll do on Wikipedia, and be ready for grading.