Structural Insights

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His296, Asp345, and Ser441 catalytic triad within the Serine Peptidase domain on TMPRSS2 that is characteristic of almost all Type II Serine proteases. The serine (green) engages in nucleophilic attack, the histidine (cyan) acts as a general base to reset the serine and the aspartate (magenta) neutralizes the histidine in transition states during reactions that cause proteolytic cleavage. This structure was solved via x-ray crystallography with a resolution of 1.95 Angstroms (PDB: 7MEQ) (1). Image made in Chimera.
 
Solved structure of TMPRSS2 is shown here (PDB: 7MEQ), the entire protein is oriented with the extracellular side towards the top and the cytoplasmic side towards the bottom (1). Bound calcium ions are shown in blue and function as stabilizing cofactors. This view (generated in Chimera) illustrates the largely open conformation that exposes the catalytic triad.

As a type II transmembrane protease, TMPRSS2 consists of an intracellular N-terminal domain, a Transmembrane domain, a stem region that extends extracellularly and a C-terminal domain that catalyzes its Serine protease (SP) activity[1]. This serine protease activity is orchestrated by a catalytic triad containing the residues His296, Asp345, and Ser441.[1][2] This noted catalytic triad is typically responsible for the cleaving of basic amino acid residues (lysine or arginine residues)— consistent with what is observed in the S1/S2 cleavage site found in SARS-CoV-2.[1] A notable domain in the stem region that has been examined through mutational analysis is the low density lipoprotein receptor class A domain (LDLRA).[1] Experimental evidence suggests that this domain likely participates in enzymatic activity of the protein and has been examined alongside another motif in the stem region: the scavenger receptor cysteine-rich domain (SRCR).[1] This domain may be implicated in the binding extracellular molecules and other nearby cells.[3][4] Interestingly, SRCR could have a role in overall proteolytic activity of the protein, which could lead to implications on the overall virulence of SARS-CoV-2.[5][1][6]

  1. ^ a b c d e f Wettstein, Lukas; Kirchhoff, Frank; Münch, Jan (2022-01-25). "The Transmembrane Protease TMPRSS2 as a Therapeutic Target for COVID-19 Treatment". International Journal of Molecular Sciences. 23 (3): 1351. doi:10.3390/ijms23031351. ISSN 1422-0067. PMC 8836196. PMID 35163273.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  2. ^ Fraser, Bryan J.; Beldar, Serap; Seitova, Almagul; Hutchinson, Ashley; Mannar, Dhiraj; Li, Yanjun; Kwon, Daniel; Tan, Ruiyan; Wilson, Ryan P.; Leopold, Karoline; Subramaniam, Sriram; Halabelian, Levon; Arrowsmith, Cheryl H.; Bénard, François (2022-09). "Structure and activity of human TMPRSS2 protease implicated in SARS-CoV-2 activation". Nature Chemical Biology. 18 (9): 963–971. doi:10.1038/s41589-022-01059-7. ISSN 1552-4450. {{cite journal}}: Check date values in: |date= (help)
  3. ^ Paoloni-Giacobino, Ariane; Chen, Haiming; Peitsch, Manuel C.; Rossier, Colette; Antonarakis, Stylianos E. (1997-09). "Cloning of the TMPRSS2 Gene, Which Encodes a Novel Serine Protease with Transmembrane, LDLRA, and SRCR Domains and Maps to 21q22.3". Genomics. 44 (3): 309–320. doi:10.1006/geno.1997.4845. {{cite journal}}: Check date values in: |date= (help)
  4. ^ Wettstein, Lukas; Kirchhoff, Frank; Münch, Jan (2022-01-25). "The Transmembrane Protease TMPRSS2 as a Therapeutic Target for COVID-19 Treatment". International Journal of Molecular Sciences. 23 (3): 1351. doi:10.3390/ijms23031351. ISSN 1422-0067. PMC 8836196. PMID 35163273.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  5. ^ Guipponi, Michel (2008). "TMPRSS3, a type II transmembrane serine protease mutated in non-syndromic autosomal recessive deafness". Frontiers in Bioscience. 13 (13): 1557. doi:10.2741/2780.
  6. ^ Afar, D. E.; Vivanco, I.; Hubert, R. S.; Kuo, J.; Chen, E.; Saffran, D. C.; Raitano, A. B.; Jakobovits, A. (2001-02-15). "Catalytic cleavage of the androgen-regulated TMPRSS2 protease results in its secretion by prostate and prostate cancer epithelia". Cancer Research. 61 (4): 1686–1692. ISSN 0008-5472. PMID 11245484.