User:Gaurav/Biodiversity databases

Here is some information on biodiversity databases I collected once. Someday I (or someone else) will hopefully move them into List of biodiversity databases.

Name Type Focus Collection
List of Prokaryotic names with Standing in Nomenclature

[1]

Taxonomy Prokaryotes (bacteria and archaea) Taxon names, current status, changes over time. Includes new descriptions, subspecific splits, and those published outside the International Journal of Systematic and Evolutionary Microbiology.
Integrated Taxonomic Information System

[2]

Taxonomy All life Taxon names, current status, source information.
NCBI Taxonomy

[3]

Taxonomy All life, some non-living things Widely used in the Semantic Web community because of the taxonomy ontology.
Mammal Species of the World, 3rd edition

[4]

Taxonomy Mammals Reasonably authoritative for mammals, does not have full references online.
Interim Register of Marine and Nonmarine Genera

[5]

Names (taxonomy?) All life? Big dataset, should be pretty clean, should be pretty independent of other sources, maybe. Available on GBIF as DwC-A.
IUCN Red List

[6]

Names (taxonomy?) Eukaryotes? Widely used outside of biology (in law, etc.)
AmphibiaWeb

[7]

Taxonomy Amphibians Has lists of families and lists of species available for direct download.
AntWeb

[8]

Taxonomy Ants List of species
Hymenoptera Online

[9]

Taxonomy Hymenoptera Incorporates data from AntWeb; in turn incorporated by ITIS, which is incorporated by CoL.
World Register of Marine Species

[10]

Taxonomy? Marine species Available on EOL. Supported by dwca-hunter, which downloads it from EOL.
Catalogue of Life

[11]

Taxonomy? All life? Downloads are Windows only, but consist largely of MySQL dumps, so it should be possible to get them working whenever. Annual downloads available for 2000 and 2002–2011. Available on EOL.
Catalogue of Diatom Names

[12]

Taxonomy? Diatoms (Bacillariophyceae) ?
Index Nominum Algarum

[13]

Taxonomy? Algae ?
AlgaeBase

[14]

? Algae ?
Taxonomicon

[15]

? ? Has some interesting association data, e.g. Panthera tigris with Influenza H5N1
Stromboidea

[16]

? ? ?
The AOU Check-list of North American Birds

[17]

? ? ?

Other databases available for download

edit
USDA GRIN Taxonomy
Checklists on Project Gutenberg
GBIF
Freebase
Wikispecies
ENA (EMBL-EBI) taxonomy data
Cephaloleia beetles
Metalmark Moths
IOC World Bird List
USDA PLANTS checklist
Sponge barcoding project
MycoBank
AntWeb
VegBank
http://vegbank.org/vegbank/general/faq.html#whatconcept (has taxon concepts!)
iNaturalist
http://www.inaturalist.org/taxon_changes (has taxon concepts!)

Databases NOT available for download

edit

Regional databases

edit
Australia

Lists of other databases

edit

Others

edit

Databases to add to one of the lists above after more research.

  1. ^ "Archived copy". Archived from the original on 2010-12-30. Retrieved 2013-01-21.{{cite web}}: CS1 maint: archived copy as title (link)
  2. ^ "Integrated Taxonomic Information System". www.itis.gov. Archived from the original on 2021-10-22. Retrieved 2024-06-07.
  3. ^ "Home – Taxonomy – NCBI". www.ncbi.nlm.nih.gov. Archived from the original on 2024-03-01. Retrieved 2024-06-07.
  4. ^ "Mammal Species of the World – Browse". www.departments.bucknell.edu. Archived from the original on 2008-09-14. Retrieved 2024-06-07.
  5. ^ "Archived copy". Archived from the original on 2014-10-29. Retrieved 2013-01-21.{{cite web}}: CS1 maint: archived copy as title (link)
  6. ^ http://www.iucnredlist.org/search/link/507358c3-ac245141
  7. ^ "AmphibiaWeb | Home". amphibiaweb.org. Archived from the original on 2011-02-23. Retrieved 2013-01-21.
  8. ^ "Antweb". www.antweb.org. Archived from the original on 2018-03-10. Retrieved 2024-06-07.
  9. ^ "Taxa: Hymenoptera | Valid |". mbd-db.osu.edu. Archived from the original on 2024-06-05. Retrieved 2024-06-07.
  10. ^ "WoRMS – World Register of Marine Species". www.marinespecies.org. Archived from the original on 2024-06-06. Retrieved 2024-06-07.
  11. ^ "COL". COL. Archived from the original on 2020-03-03. Retrieved 2024-06-07.
  12. ^ "California Academy of Sciences – Department of Invertebrate Zoology & Geology – Catalogue of Diatom Names – About the Catalogue". researcharchive.calacademy.org. Archived from the original on 2024-06-07. Retrieved 2024-06-07.
  13. ^ "UC/JEPS: Center for Phycological Documentation". ucjeps.berkeley.edu. Archived from the original on 2024-04-28. Retrieved 2024-06-07.
  14. ^ "AlgaeBase :: Listing the World's Algae". www.algaebase.org. Archived from the original on 2020-08-29. Retrieved 2024-06-07.
  15. ^ "The Taxonomicon". taxonomicon.taxonomy.nl. Archived from the original on 2015-02-11. Retrieved 2013-01-21.
  16. ^ "Gastropoda Stromboidea | Main / Home Page". www.stromboidea.de. Archived from the original on 2021-03-03. Retrieved 2013-01-21.
  17. ^ "Archived copy". Archived from the original on 2007-08-19. Retrieved 2013-01-21.{{cite web}}: CS1 maint: archived copy as title (link)