List of protein secondary structure prediction programs

List of notable protein secondary structure prediction programs

Name Method description Type Link Initial release
RaptorX-SS8 predict both 3-state and 8-state secondary structure using conditional neural fields from PSI-BLAST profiles Webserver/downloadable server download 2011
GOR Information theory/Bayesian inference Many implementations Basic GOR GOR V 2002 (GOR V)
Jpred Multiple Neural network assignment from PSI-BLAST and HMMER profiles. Predicts secondary structure and solvent accessibility Webserver server and API 1998
PredictProtein Profile-based neural network Webserver server 1992
PSIPRED two feed-forward neural networks which perform an analysis on output obtained from PSI-BLAST Webserver server 1999

See also

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